EGAF00005413838 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005413838
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	657264
Sequences flagged as poor quality	0
Sequence length	91
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2870	0.4366586333649797	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2634	0.40075220915796395	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1835	0.2791876627960759	No Hit
GTGGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTT	1342	0.2041797512110811	No Hit
GTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1054	0.16036174200929915	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	949	0.14438642615448283	No Hit
GGGAATGAGAACGGAAAATCTCACTAAGGAAGACGAAGTCGATGGAGCAA	863	0.13130188174006183	No Hit
GTATCAACGCAGAGTACGGGATCGACACAGGGAATGAGAACGGAAAATCT	715	0.10878429367803501	No Hit
ACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	713	0.10848000194746707	No Hit
GGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	692	0.10528493877650381	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGTATC	1210	0.0	54.788433	2
GTGGTAT	1250	0.0	53.399548	1
GTATCAA	4285	0.0	41.47376	1
GATAGGC	45	0.001663267	37.77436	7
TATCAAC	4955	0.0	36.27825	2
GGTATCA	2240	0.0	33.594887	1
ATCAACG	5410	0.0	33.227123	3
TCAACGC	5410	0.0	33.227123	4
CAACGCA	5610	0.0	32.042557	5
GACAGGT	325	0.0	31.396109	1
AACGCAG	5770	0.0	31.15403	6
CGCAGAG	6390	0.0	28.202053	8
GTCGAGG	755	0.0	28.147432	8
ACGCAGA	6495	0.0	27.676481	7
GCAGAGT	6630	0.0	27.245274	9
ATACGGG	125	5.6986573E-7	27.19754	7
AGCGTCA	95	7.4497264E-5	26.83968	3
ACACCGA	100	1.0558951E-4	25.497694	6
CAGAGTA	3260	0.0	24.644842	10-11
TCGAGGT	875	0.0	23.801468	9