FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005413929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005413929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1080628
Sequences flagged as poor quality0
Sequence length61
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63660.58910189260319No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATCGT458.8330835E-636.67308847
GTGGTAT8400.034.369881
TGGTATC8750.032.6702582
GTATCAA43600.029.0725021
GGTATCA21150.026.5208721
TATCAAC48500.026.4668582
ATCAACG52550.024.00643
TCAACGC52600.023.981364
AGAGTAC48800.023.83243611
CAGAGTA49550.023.63707410
CAACGCA53800.023.6007965
AACGCAG54050.023.5457536
CTATACT1705.456968E-1222.6321584
ACGCAGA56600.022.5335087
CGCAGAG56800.022.2616258
CGTACGA650.003234599321.1595135
AGTACGG53700.021.15067313
GCAGAGT60850.021.053929
CGGGATC4450.021.0129717
TAGCGCG1055.504531E-620.95799334
Produced by FastQC (version 0.11.5)