FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005413949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005413949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92
Sequences flagged as poor quality0
Sequence length61
%GC34

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTACGGTAGCACTTCCCAGAGCTTTCCGCTAAAACACATATAACTTAATGGGCTGATCC11.0869565217391304No Hit
GAACAGTACAAAATAAACATCGAAAAAGGACACAAAAAACAAACATAAAAATACAAATCCA11.0869565217391304No Hit
GTAACAACCCAAATTACCTGCGCAGGACAAGATAAAGATTCATACTCATAAAAAAAAATAA11.0869565217391304No Hit
GACGAATTCTAAAGACCAAACAACAATTATTTTATTTTTGAATTTAAAAAAAAAAAAAAAA11.0869565217391304No Hit
CAGTTTATCCACAGAGCCAATTCTAGCAAATGCGCCATCTCCGTTAGATGCCGACCGACCA11.0869565217391304No Hit
GCACCTTCAAATCTCACAGTATCCATGAACTAGTTAGAACAACAGATACACCTGCATAAGC11.0869565217391304No Hit
GTCGTATAACAGCACAGAATACCAAAAATTTAATTTTTATAAATTTTATATAAGATTATAT11.0869565217391304No Hit
TAGGCCTACTATTGGTCTTAAATTTTTTACAATCTCTACAATTTATTTTACTAGTTTACAA11.0869565217391304No Hit
GTCTTGAACTTGACAATAGAATTGTACATATTTTCAGTGAATCTGACAAGATCCACATTGC11.0869565217391304No Hit
AGGCAGTAGAGCTCCCAGCAGGAATTGCCAATCTGGACACCAGCCTGGCCAACGTGGATGG11.0869565217391304No Hit
ATATAAACCTAAACCTACAAATCACTGTGCTACTAACCAACTTCTCCTGATCAAAAATCAA11.0869565217391304No Hit
CTTGCAGTGAGCCGAGATGGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGT11.0869565217391304No Hit
GTATCAACGCAGAGTACGGGGCAGTAGAGTCTGGAGAGTTTAGAATGATGGTTTTTGCAAT11.0869565217391304No Hit
AACTAACTCTGTTTTTATGGTCCATCTACCAATGTCTTCCGAGCAGTTCTCTCTCATCAAA11.0869565217391304No Hit
CATTACCAGCAAAACACCAAAAAAAACCAAAAACAATAAAAAAAAAAAATAACACAACAAA11.0869565217391304No Hit
GGTATATCCAACTACCTAGCAGGCATATCCATATGGTTCCACAGGTACCTCAAATTCTGTA11.0869565217391304No Hit
GTGTAAAACTCTAATGTTAAAGATATGTGTGTAATAAAAAAAAAAAAAAAAAAAAAAAAAT11.0869565217391304No Hit
CTCCCCTATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAATAAAAA11.0869565217391304No Hit
ACAGTTAAAATAACCAAAAACACATAAATACAAAAAAAGACAAATAGAAACAAAAAATACT11.0869565217391304No Hit
GTATCAACGCAGAGTACGGGAAAGATTGTACCTCTACATGAACCACCTAACAAACAAACTA11.0869565217391304No Hit
AAATATAACAACACACAATAATGTAATTATAATAAAATAATAAAAAAAATAAAAAAAAAAA11.0869565217391304No Hit
TCGATTTTATTTTTATTTATGTTTATTTTTTATGTATAAGCATTGCCCAACTAAACCTATT11.0869565217391304No Hit
CCCTGCTCTCTCAGCGGATCTCCTCCCTCACAGCATCACTACATGCACACAGCCGCAAAAA11.0869565217391304No Hit
GTGCAGTGGGTGAGCTTTGCTGATTCCGATATAGTGCCCCCAGCCAGTACCTGGGTGTTCC11.0869565217391304No Hit
GTGGTATCAAAGCAGAGTGGACTAATTTAATTTTTATTATTTTTTTGAATAAGAGTAACTG11.0869565217391304No Hit
GAGTGGCTGAGAATTTAATACTGGTAAACACTATAAATTGTAAATGTAAGTTGTAAATGAC11.0869565217391304No Hit
CTGAAAATGCAACAGATAAAAACGGATGGACCCCGAGGGCATTAGCTGATCTGTACAATGA11.0869565217391304No Hit
AATTATAATATAATATTCAAAAAATTAGTACAGATCTTAAATATGAATATGCGCCAAATTG11.0869565217391304No Hit
CAAATCTTGGTAAATTAGCAGCAACTCACCATCAATATAGTCATAGATACTCAATCTCCTA11.0869565217391304No Hit
GCCTGAGATGGTACCATCTGCATGGCCCCGCACCAGTTGGAGCAGATGCCTCCCCACCACA11.0869565217391304No Hit
CAATAATAATATGCCCTTTCTGCACCAAGAGATAAACTCTACGTAACTACACAAAAAAACC11.0869565217391304No Hit
CATCTATACAGCCAAGCAACTATATCATCATAAAAAACTTCACATACATATAAAATAAATA11.0869565217391304No Hit
CAAGTAGATGTTAGTTATAAGAACCCACACCGCAATCATTGACCTCACGGGAATCTAGAGG11.0869565217391304No Hit
GTGCTGTCATCGAAAAGAAGAAAATATTTTATTTATTTTTTTTTTTTTTTTTTTTTTTTTT11.0869565217391304No Hit
GTATCAACGCAGAGTACTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.0869565217391304No Hit
AATTTAGATAATTCCTCTCATCAGAGTCACATAAAAAACCATACACTGCCTTTCTAACTGT11.0869565217391304No Hit
GCCCGCCGCTACGTCTGCACCAGCAAGGACTTGCGGAGGGTTAGCACCCGCTTCATGGTGC11.0869565217391304No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGG11.0869565217391304No Hit
GTGGTATCAACGCAGAGTACGGGCCCCTGAATGCGAAAAAAAAAAAAAAAAAAAAAAAAAA11.0869565217391304No Hit
ATGCTACCTTTGCACGGTTAGGCTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCGGT11.0869565217391304No Hit
GCCAAGAGCCCACTCGAGGGCGTTTCCTCCTCACGCGCCCTGCACGCGGGGCGCGGGCCCC11.0869565217391304No Hit
GAACATAACAACATTCACAAAAAAAAAACTAGACCCCAACAATAAAAAACCAAAAAACCCC11.0869565217391304No Hit
AACAACACATACTAAGGGTTAACAGAGGTATCAACTCAAAAAAAAAAAAAAAAAAAAAAAA11.0869565217391304No Hit
GATATTGTCAGAAGGGATCTCAAATCCTTTATAAATATACTTCATTAGGAGATACACACCA11.0869565217391304No Hit
GCATTGTGCTAAGTATTCAACTCAAAAATATAATATAGGATCCCTGGAAAACAAAAATCAA11.0869565217391304No Hit
CTACTCAATCACTGCACGGAAGCATCTCACCAAACGGCAATATTTAGTGATATGTTAAATA11.0869565217391304No Hit
GTGGGAACACTGCTCTCAGACATTACAAGACTGGACCTGGGAAAACGCATCCTGGACCCAC11.0869565217391304No Hit
CAGGTACCCCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGGGCTGGACATATTT11.0869565217391304No Hit
CACACATCACACTGTACACACCAATATTCACATAAAAAAAATCACTATAAACACAATATAA11.0869565217391304No Hit
GTAATGAGGCGTGCGCCGCCAATATGAACTGTACATTCCACAAGCATTGCCTTCTTATTTT11.0869565217391304No Hit
TACCAGACAAGAGAACCATTATACTTTATAACAGCCAAAAATAAAAAAAAAAAAAAAAAAC11.0869565217391304No Hit
TTAAAATACTCTGATTTCTTTATCTCTTGTCACATCAACTGACACTGCAGGTCAGCTTTCC11.0869565217391304No Hit
CATACATTTAGTTAAATCGTTTTTAATAAATAGTCGTTCTCGTATATATACTCCATTTGAA11.0869565217391304No Hit
AGAAAGACAGATGTGAAAGGCAGGCGCAGCCATCGTTGTCAGAAGATCTTTGATGTAAAAG11.0869565217391304No Hit
CATCTAAGTCGTAATATTTTCTCTAAAAATCATAATCTATTAAAAATACATTAAAAAATTA11.0869565217391304No Hit
ATTCCATACCATTCCATTCAACTCCATTCCAAAGCACTCGATTATAATAAATTCCACACCA11.0869565217391304No Hit
CTATAAAATTCTTAGAGAAACCAGAAAAACAATATAAAATCAAACAAACAGGAAGCACATA11.0869565217391304No Hit
ACAGATATCAACGCAGAGTACGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.0869565217391304No Hit
ACTATCTGGTGTGCTTGGATTTATCATGAATAATGAAAAACCAAGACCAGGATCTTAGTTC11.0869565217391304No Hit
GTATCAACGCAGAGTCGACTTTTTTATTATTTTTTTTTTTTTTTTTTTTTTTCAGAGGTTG11.0869565217391304No Hit
GGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGTGGGGTGGGGGTGGGGGGGGGGGTGGG11.0869565217391304No Hit
ATATCAACCCATAGAACACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAA11.0869565217391304No Hit
ATCAACGCAGAGTACGGGGAGGGAAGAGAATCAAAAGAAACTGAAAAAAGGAAACAATGAA11.0869565217391304No Hit
GCAAACCTACAACAACACAATTCATAAAAAACCAACACAAATTCAATCCAAAAAAAAAAAA11.0869565217391304No Hit
ATTATCAACGCATAGTACATAATATTTTTGTTTTATTTAATTTATTTATATATATGGATTT11.0869565217391304No Hit
CAAAAAAGAAACAAAACAACAAAATTAAAAAAAACACAAACAAAAAGCAAAACAAGTATCA11.0869565217391304No Hit
GTTGGTATTTGTCTGTGATTTGGTTATTGTTGGTGTTCTGGAAAGAAGGTTAGTATACTTT11.0869565217391304No Hit
GTCTTCAAACCGTGCTGAAATTTTCCTTGATTTAAAATTGGAGGAAGGCGCATCACTGACT11.0869565217391304No Hit
CACAAAACCCAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.0869565217391304No Hit
GTATCAGCTAAGAGTCTAAATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTGAGATT11.0869565217391304No Hit
AAACTAAACACCTAATAAAATTAATTAACAACAAATTCATCGACCTCACACCAACAACCCA11.0869565217391304No Hit
CTATAACACAGGATAAAAAAATGTATCACAAGAAAAACTAAACGTAGGGATTAACAAAACA11.0869565217391304No Hit
CTTTTCTTCCTCTCTAAATTACTCACGACAACATATCATCCTCTTCTTTCCAGAAGACAAT11.0869565217391304No Hit
CACAACGTGCAACAAGAACAAAAGTAAATAGGACTGAAAGTTTAACGGTAAAAACAACTGA11.0869565217391304No Hit
AACAATACATATTTTTTTATAAACACGTACTCTGAAAAGAAAAATAACATTTACAAAAATA11.0869565217391304No Hit
GTATCAACGCAGAGTACGGGGATAAAAGGTACTCTGGGGATAACAGCTGTCGCTTATACAA11.0869565217391304No Hit
GTGGTATCAAAGCAGAGTCGACATTTTTTTTTTTTTTTTTTTTTTTTTTTAGACTTATGTA11.0869565217391304No Hit
GAATAAAGGAAGGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.0869565217391304No Hit
TTCAAAGACCAGACTAAAAATTAATTATATTTAATAATTATTGGAGGTAAAATCCAAAGAT11.0869565217391304No Hit
CAAAAACATAAAAAACAACTTCTCACTCAACAACACCCAAAAAATTACAACCCTCTACATA11.0869565217391304No Hit
GCCATACCAAAATCCACATCAAATCAATGAACACAAAAAAAGAATTAGAACACAAAATAAA11.0869565217391304No Hit
GACAGCTTCAGCGGCCTGTCTTAGGGACTGGATCCTACCTATGTTTATTACCTTATAGAAC11.0869565217391304No Hit
CCCTTAGACATCTTGTCCAAACCAGCCAGATGGGCAAAACCAGGAGCCTTGATCTTGCATC11.0869565217391304No Hit
CTCTTAATCTCAGCATCCGGAGCTACAGGAAGGGAAAATTTCAAGTCAGATAGAATTCTAT11.0869565217391304No Hit
GTATCAACTCAGAGTCAAAATTATTATTTATATTAATTTATTTTATTATAATATTTAACAG11.0869565217391304No Hit
AAGCACTCACCCAAGAATAAAAGTAATATTTAAATAACTTAAAATCAAATGGAAAGAATAA11.0869565217391304No Hit
GCTATTATCTTAGTTTAATGCATAAAATAATAAATTTTATAATAAAAAACAAGCCATTTAT11.0869565217391304No Hit
GAGTGCTATGTTTTTAATAAAAAGTTGCATGGGCCTTGTTTCTGTGGCTGCCAATAGCTCA11.0869565217391304No Hit
CTACAAAGGTCGGTAAAAATGGTTTCTACCTAGAGATAGGATGCTAATCTCAAAAAGCCGA11.0869565217391304No Hit
GCTATCAAAACACAGTACGCGGTACCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.0869565217391304No Hit
GCTTGAATGTCACTTTGAAAACTATTAAGAATAAGCAGAAACACAAGGGACGTCAGACAGA11.0869565217391304No Hit
GTATAGAAAGATAACACGAACAACAGAAAAATAAAGAGCACAACAACATAAATAGAAAATA11.0869565217391304No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGCGT50.055.06
ACTGTAC50.055.028
CCAATAT50.055.019
CATTGCC50.055.045
GCCTTCT50.055.049
AACTGTA50.055.027
TGCGCCG50.055.012
GGCGTGC50.055.08
TTATTTT50.055.055
CACAAGC50.055.039
CCGCCAA50.055.016
GTACATT50.055.031
AGGCGTG50.055.07
CGCCAAT50.055.017
ATGAACT50.055.024
CATTCCA50.055.034
TAATGAG50.055.02
TATGAAC50.055.023
TACATTC50.055.032
CAATATG50.055.020