EGAF00005414065 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005414065
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	139011
Sequences flagged as poor quality	0
Sequence length	61
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	846	0.6085849321276734	No Hit
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	355	0.2553754738833618	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	339	0.24386559337030883	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	209	0.15034781420175383	No Hit
GTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	184	0.1323636259001086	No Hit
GTGGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	164	0.11797627525879247	No Hit
TCATAGGACAGAGGAGTGAGTTCTGTCAACAGACAGGCGGCCCCTACTTGCCGGCGATGAG	141	0.1014308220212789	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCAAT	20	2.6024992E-4	55.01332	24
TTCGTCA	20	2.6024992E-4	55.01332	22
GTCAATT	20	2.6024992E-4	55.01332	25
CTCCATG	15	0.005767423	55.01332	47
ATTCGTC	20	2.6024992E-4	55.01332	21
CGGGATT	20	2.6024992E-4	55.01332	17
TCCATGA	15	0.005767423	55.01332	48
GGGATTC	20	2.6024992E-4	55.01332	18
ACTCCAT	15	0.005775646	54.993526	46
GTGGTAT	545	0.0	45.895508	1
TACCACT	30	3.4703105E-5	45.844433	13
TTAAACG	30	3.4703105E-5	45.844433	22
GGATTCG	25	7.8371266E-4	43.994816	19
GATTCGT	25	7.8371266E-4	43.994816	20
TTGCGCG	25	7.8371266E-4	43.994816	30
GACAGGA	25	7.851034E-4	43.978992	1
TGGTATC	570	0.0	43.400322	2
TAAACGC	35	8.616112E-5	39.295223	23
TCAATTG	30	0.001917527	36.675545	26
AACGCCC	30	0.0019209206	36.66235	39