EGAF00005414145 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005414145
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	296673
Sequences flagged as poor quality	0
Sequence length	61
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2213	0.7459391316365156	No Hit
GTAATTAAGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTAATAGCCT	398	0.13415443939960833	No Hit
GTACGGGACTATCACCCTCTACGGTAGCACTTCCCAGAGCTTTCCGCTAAAACACATATAA	385	0.12977251047449548	No Hit
CTACGGTAGCACTTCCCAGAGCTTTCCGCTAAAACACATATAACTTAATGGGCTGATCCCC	346	0.116626723699157	No Hit
TCCCAGAGCTTTCCGCTAAAACACATATAACTTAATGGGCTGATCCCCGTTCGCTCGCCGC	337	0.1135930805971558	No Hit
ACCTTATGGTAAGTGGGTTTCCCCATTCAGAAATCTCCGGATCACAGGATATTTGCCGCCT	323	0.10887408021626505	No Hit
GTATCAACGCAGAGTACGGGACTATCACCCTCTACGGTAGCACTTCCCAGAGCTTTCCGCT	306	0.10314386546804058	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATAAC	25	7.857341E-4	43.988266	6
TCCACGA	35	8.648575E-5	39.288483	12
CCACGAG	35	8.648575E-5	39.288483	13
GCTTGTA	80	3.929017E-10	34.38322	1
CTCTTCG	35	0.0040933634	31.430788	34
ATCGGTA	35	0.004096743	31.42549	28
AGCCGCT	45	3.7872556E-4	30.55771	13
CTACGTG	45	3.7872556E-4	30.55771	52
TGGTATC	505	0.0	30.492058	2
GTGGTAT	530	0.0	30.101536	1
GTATCAA	1810	0.0	28.570366	1
CGTAAGC	40	0.007861168	27.50194	53
GCGTAAG	40	0.007861168	27.50194	52
CGGCCAC	50	7.016649E-4	27.501938	12
CGAGGGT	50	7.016649E-4	27.501938	16
AACGCAG	2005	0.0	26.327145	6
AGAGTAC	1845	0.0	26.234913	11
TATCAAC	2055	0.0	25.958523	2
CAGAGTA	1865	0.0	25.801758	10
TCAACGC	2085	0.0	25.31699	4