EGAF00005414170 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005414170
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1624373
Sequences flagged as poor quality	0
Sequence length	91
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4539	0.2794308942588925	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4201	0.25862286556105035	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2760	0.16991171362735039	No Hit
GTACGGGACTATCACCCTCTACGGTAGCACTTCCCAGAGCTTTCCGCTAA	2467	0.151873984608215	No Hit
GTGGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTT	2370	0.1459024497452248	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	2356	0.14504057873407156	No Hit
GTAATTAAGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGA	2188	0.13469812660023284	No Hit
ACGTAATAGCCTGCGATAAGCTTCGGGGAGGCGGCAAATATCCTGTGATC	2140	0.1317431402762789	No Hit
ACCTTATGGTAAGTGGGTTTCCCCATTCAGAAATCTCCGGATCACAGGAT	2031	0.1250328588323002	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA	1998	0.12300130573458189	No Hit
TCCCAGAGCTTTCCGCTAAAACACATATAACTTAATGGGCTGATCCCCGT	1910	0.11758383080733305	No Hit
GTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1878	0.11561383992469709	No Hit
CTACGGTAGCACTTCCCAGAGCTTTCCGCTAAAACACATATAACTTAATG	1783	0.10976542949187164	No Hit
GTACGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTC	1761	0.10841106076005944	No Hit
ACTATGTATTCATCATGCGATACCTACCTTATGGTAAGTGGGTTTCCCCA	1752	0.10785700082431805	No Hit
CCATAAGGTAGGTATCGCATGATGAATACATAGTCATGCGAGGCGAACGA	1728	0.1063795076623411	No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT	1635	0.10065422165968038	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGTATC	3565	38.028698	2
GTATCAA	11325	37.3917	1
GTGGTAT	3575	37.34287	1
GACAGGT	690	33.889698	1
AACGCAG	12800	32.936844	6
TCAACGC	13395	31.600716	4
TATCAAC	13600	31.374376	2
ATCAACG	13650	31.103773	3
CAACGCA	13785	30.737509	5
GTCGAGG	1520	30.477306	8
ACGCAGA	14415	29.305695	7
CGCAGAG	14525	29.084654	8
GCTTGTA	890	27.707165	1
ACAGGTA	745	27.392967	1
GCAGAGT	15670	26.96028	9
GGTATCA	6635	26.656708	1
AGACAGG	760	24.614624	1
CAGAGTA	9545	24.090275	10-11
ATTAGAG	1020	22.91621	3
GGCACCG	960	22.13634	9