FastQCFastQC Report
Wed 8 May 2024
EGAF00005414244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005414244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1149303
Total Bases104.5 Mbp
Sequences flagged as poor quality0
Sequence length91
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT32540.2831281220008997No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGT28490.2478893729503882No Hit
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23000.2001212909041393No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15000.13051388537226477No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)