EGAF00005414252 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005414252
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	644774
Sequences flagged as poor quality	0
Sequence length	91
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3350	0.5195618930043705	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2504	0.38835312838296826	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1947	0.30196627035209234	No Hit
GTGGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTT	1321	0.20487798825635029	No Hit
GTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1283	0.19898445036555445	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	911	0.14128981627671092	No Hit
ACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	855	0.1326046025429065	No Hit
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	767	0.11895640953264244	No Hit
GGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	745	0.11554436128007643	No Hit
GGGAATGAGAACGGAAAATCTCACTAAGGAAGACGAAGTCGATGGAGCAA	733	0.11368324405140405	No Hit
GTATCAACGCAGAGTACGGGATCGACACAGGGAATGAGAACGGAAAATCT	719	0.11151194061795296	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGTATC	1140	0.0	59.644875	2
GTGGTAT	1195	0.0	56.579197	1
GTATCAA	4875	0.0	40.473515	1
GGTATCA	2515	0.0	38.55	1
TATCAAC	5525	0.0	36.22819	2
ATCAACG	6075	0.0	32.948273	3
TCAACGC	6100	0.0	32.813236	4
CAACGCA	6300	0.0	31.839003	5
AACGCAG	6430	0.0	31.393566	6
ACCGTTG	60	0.006805764	28.33132	8
ACGCAGA	7285	0.0	27.709078	7
GTCGAGG	860	0.0	27.672447	8
CGCAGAG	7265	0.0	27.60987	8
GCAGAGT	7370	0.0	27.216516	9
CAGAGTA	3630	0.0	26.692316	10-11
GACAGGT	330	0.0	25.771732	1
GTATAGC	85	0.0012220498	25.013739	1
TCGAGGT	880	0.0	24.628927	9
GACAGGA	440	0.0	24.160995	1
ACGGGCG	80	1.8329229E-7	23.904549	16-17