FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005414336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005414336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2203778
Sequences flagged as poor quality0
Sequence length91
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACCGT651.7989805E-952.3122186
GTATCAA31050.034.909571
GCACCGG751.4834228E-534.002946
TGTACCG802.3067878E-531.8777585
CAACGCA32850.031.4410745
GGTATCA17050.031.4131931
TCAACGC35150.029.5046834
CGACGAG2400.029.21696924-25
CTGTGCG5000.028.8965979
ATCAACG36200.028.76633
GCGCGTT300.00680552528.33514250-51
ACCGAAC600.00681083228.3299988
ACTAACG755.911456E-428.3299988
TATCAAC38700.027.786642
CGTAACG853.965397E-1027.4980122-23
AACGCAG38250.027.3356976
CGCAGAG38000.027.0626038
TAGACCG1308.0278187E-726.1561095
TGGTATC9300.026.050642
ACGCAGA42350.024.6847847
Produced by FastQC (version 0.11.5)