EGAF00005414468 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005414468
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1811337
Sequences flagged as poor quality	0
Sequence length	91
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3763	0.20774709510157416	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3663	0.20222631128277066	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	2897	0.1599371072307362	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA	2415	0.13332692922410352	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2325	0.12835822378718043	No Hit
GTACGGGACTATCACCCTCTACGGTAGCACTTCCCAGAGCTTTCCGCTAA	2295	0.12670198864153936	No Hit
GTACGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTC	2236	0.12344472618844532	No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT	2205	0.12173328320461627	No Hit
GTGGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTT	2067	0.11411460153466749	No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA	1913	0.10561259445371016	No Hit
GTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCGGTGCCTC	1899	0.10483968471907767	No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA	1892	0.10445322985176145	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	10580	39.296204	1
TGGTATC	2995	35.899567	2
AACGCAG	11875	35.322308	6
GTGGTAT	3100	34.83128	1
TCAACGC	12675	33.227005	4
ATCAACG	12700	33.128136	3
CAACGCA	12810	32.91001	5
TATCAAC	13030	32.25651	2
ACGCAGA	13295	31.581598	7
CGCAGAG	13485	31.168999	8
GCTTGTA	1040	30.656696	1
GGTATCA	5795	30.149895	1
GTCGAGG	1250	29.239231	8
GCAGAGT	14475	29.095953	9
TTGTACG	250	28.898443	3
GACAGGT	690	28.340412	1
GGTACGG	330	25.756187	3
CTTGTAC	635	24.762447	2
ACAGGTA	825	24.73345	1
CAGAGTA	9450	24.240772	10-11