FastQCFastQC Report
Thu 12 May 2022
EGAF00005415948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005415948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27693555
Sequences flagged as poor quality0
Sequence length125
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC1096280.395861058647039No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA534440.1929835299223953No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT481710.17394299865076912No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG429480.15508301480254158No Hit
TGGGTTTTGTTATTTTAATAAATTTTGTTTTTGGGTGGGTGTAGGTATAA367720.132781797064335No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGT278190.10045297543056497No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT277500.10020381998627478No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)