FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005415949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005415949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29168630
Sequences flagged as poor quality0
Sequence length125
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGTGTGGTGGTTTATGTTTGTAATTTTAGTATTTTGGGAGGTTGAGGT653270.22396320979079237No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT628740.21555349017077594No Hit
TGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA523490.17947020480564224No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC518080.17761547251276458No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA514890.1765218318446907No Hit
TGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGAT454310.15575294417324365No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA400960.1374627467933873No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT347410.11910398260048553No Hit
TGGTTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTTATTGTGTTAGTT320280.10980289441087909No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG313030.10731734743798389No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)