EGAF00005416041 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416041
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14046329
Sequences flagged as poor quality	0
Sequence length	125
%GC	33

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	71547	0.5093644040375247	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	49780	0.35439864750426964	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	37337	0.26581322422392356	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	36926	0.26288719280318723	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	27944	0.19894165941862818	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	21843	0.15550682317066616	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT	21346	0.151968532133912	No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAA	17318	0.12329200035112377	No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGT	17032	0.12125588116297147	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	16581	0.11804507782780824	No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAA	14300	0.10180595940761461	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	32370	115.62918	1
CGGGTGC	10010	114.53014	1
CGGTTAA	79770	111.94564	1
CGGGTAC	12680	109.98935	1
CGGCTAA	795	109.3159	1
GGGCGCG	37620	103.027954	2
CGGAATA	23225	98.90464	1
CGGGTGT	27600	98.841286	1
CGGGTAT	30455	97.588936	1
GGCGCGG	38880	96.037766	3
CGCGGTG	38945	95.61747	5
GCGCGGT	38570	95.00517	4
CGGGCGT	40960	94.8385	1
CGGGAGG	96180	93.5389	1
CGGTAAT	10100	93.29475	1
GGGAGGC	39650	92.96675	2
CGGATGC	1080	92.04291	1
CGGGTTT	59155	89.98899	1
CGGTGGT	69595	89.43197	7
GCGGTGG	55740	89.21829	6