FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005416073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005416073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17148778
Sequences flagged as poor quality0
Sequence length125
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC592050.3452432587324881No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT299260.17450806115747725No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA228250.13309986285903289No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA200420.11687130126706403No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)