FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005416189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005416189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24005944
Sequences flagged as poor quality0
Sequence length125
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT731570.3047453580663189No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC658340.2742404131243495No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA543120.22624396691086174No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA505220.21045621034523782No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA430380.17928059817185277No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT377550.15727354858446724No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT296920.12368603375897236No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT291750.12153240047548225No Hit
TGGTGGATTTTTTGGTTTAAGTTTTGGTAATATGGTGAAATTTTGTTTTA255580.10646529876100685No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG249460.1039159301546317No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)