EGAF00005416256 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416256
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13146284
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	55609	0.4230016634358424	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	48865	0.37170199578831553	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	35996	0.2738112153974462	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	30101	0.22896964647956794	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	28007	0.21304119095555824	TruSeq Adapter, Index 4 (100% over 50bp)
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	25065	0.19066224341418456	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT	19747	0.1502097474845363	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	15934	0.12120535354325221	No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAA	15369	0.11690756110243777	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	14291	0.1087075252596095	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	8205	114.35874	1
CGGGCGC	25875	113.53298	1
CGGTTAA	61660	111.624275	1
CGGGTAC	9385	109.24812	1
GGGCGCG	30415	101.333595	2
CGGCTAA	490	96.050224	1
CGGGTAT	29970	96.012505	1
CGCGGTG	30715	95.83046	5
GGCGCGG	31195	95.34752	3
GCGCGGT	30595	95.00083	4
CGGAATA	18695	93.68915	1
CGGGTGT	26055	93.633286	1
GGGAGGC	37700	93.02738	2
CGGATGC	885	92.22416	1
CGGGTTT	57110	91.92417	1
CGGTAAT	8720	90.86624	1
CGGGAGG	92860	90.37686	1
CGGGCGT	41730	90.269745	1
CGGGTAA	7120	89.36319	1
CGGTGGT	53900	89.23098	7