EGAF00005416283 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416283
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13229320
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	57561	0.43510172858468915	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	37547	0.2838165529294023	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	35044	0.2648964572631095	TruSeq Adapter, Index 4 (100% over 50bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	28175	0.212973909467758	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	21967	0.16604783919354887	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	20019	0.15132297049281446	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	15703	0.11869846673903117	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	14308	0.10815370706884406	No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGT	13890	0.10499405865154066	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	27690	114.3158	1
CGGGTGC	8550	113.63066	1
CGGTTAA	61620	111.19803	1
CGGGTAC	9460	109.87831	1
GGGCGCG	32700	101.96507	2
CGCGGTG	33145	96.10259	5
CGGGTAT	29275	95.59249	1
GCGCGGT	32805	95.55681	4
GGCGCGG	33695	95.08139	3
CGGCTAA	495	95.066956	1
CGGAATA	17275	94.89385	1
CGGGTGT	26150	94.442024	1
CGGGTTT	54640	91.36772	1
CGGTAAT	8675	90.7757	1
GGGAGGC	31910	90.51897	2
GCGGTGG	47715	89.72557	6
CGGTGGT	57395	89.69382	7
CGGGCGT	41025	89.68849	1
CGGATAC	1400	89.3509	1
CGGATGC	890	87.677666	1