EGAF00005416287 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416287
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15468138
Sequences flagged as poor quality	0
Sequence length	125
%GC	33

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	56426	0.36478857377662394	No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	23190	0.14992108293836012	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	22932	0.14825313816052066	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	22236	0.14375356620169796	No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	18789	0.12146904818149411	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	17696	0.11440291003351535	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	17140	0.11080842438824894	No Hit
TGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	16044	0.1037228915335511	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	29640	114.198746	1
CGGGTGC	9305	113.84924	1
CGGTTAA	72960	111.27519	1
CGGGTAC	11965	109.20455	1
GGGCGCG	34695	103.672356	2
CGGGTGT	28710	97.85055	1
CGGGTAT	34470	97.12533	1
GGCGCGG	36085	96.45517	3
CGCGGTG	36035	96.22583	5
CGGGCGT	40270	95.56491	1
CGGCTAA	650	95.33113	1
GCGCGGT	35870	95.175896	4
CGGATAC	1285	92.73456	1
CGGAATA	12995	92.43342	1
CGGATGC	950	90.94088	1
CGGGTTT	62350	90.87802	1
CGGTAAT	10185	90.85005	1
CGGGAGG	82845	88.70589	1
CGGTGGT	65290	88.661064	7
GGGAGGC	33980	88.57656	2