EGAF00005416292 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416292
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11808366
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	52269	0.4426438001667631	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC	27810	0.2355109927995118	TruSeq Adapter, Index 5 (100% over 50bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	25119	0.21272206501729368	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	22592	0.19132198307538908	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	17946	0.15197699664796976	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	17104	0.14484645885806724	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	15828	0.13404056073465204	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT	13054	0.11054874146008008	No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGT	12995	0.11004909570045508	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	25680	114.45104	1
CGGGTGC	7700	113.58971	1
CGGTTAA	58820	109.87231	1
CGGGTAC	10590	107.34604	1
GGGCGCG	30410	101.47458	2
CGCGGTG	31005	96.06656	5
CGGGTAT	27305	95.529434	1
CGGGTGT	24415	95.51416	1
GGCGCGG	31290	95.47673	3
CGGAATA	13455	93.96483	1
GCGCGGT	31145	93.72471	4
CGGGCGT	37430	93.007866	1
CGGTAAT	8765	90.95108	1
CGGATGC	900	89.37064	1
CGGATAC	1315	89.25737	1
CGGCTAA	455	89.043274	1
CGGGTTT	54505	89.01264	1
CGGTGGT	55475	88.09203	7
GCGGTGG	44425	88.04297	6
CGGGTAA	6875	87.35574	1