EGAF00005416404 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416404
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20441915
Sequences flagged as poor quality	0
Sequence length	125
%GC	32

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	54545	0.26682920851593406	No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	44311	0.21676540578512335	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	40468	0.19796579723572863	No Hit
AAGTAGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAA	35218	0.17228327189502549	TruSeq Adapter, Index 13 (97% over 40bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	32465	0.1588158447973196	No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGT	27902	0.13649406134405706	No Hit
AAGCAGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAA	25481	0.12465074822980136	TruSeq Adapter, Index 13 (97% over 40bp)
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	24280	0.11877556481376622	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	23068	0.11284657039225532	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT	20566	0.1006070126013145	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	11075	109.31506	1
CGGTTAA	71260	107.41277	1
CGGGCGC	27580	103.73562	1
CGGCTAA	550	101.82753	1
CGGGTAC	11460	101.63942	1
CAGAAGA	4880	101.06385	4
AAGCAGA	5170	95.765816	1
GGGAGGC	58700	95.3346	2
AGCAGAA	5345	92.44665	2
CGGAGTG	14515	92.27399	1
GGGCGCG	33660	92.21843	2
CGGGTGT	39205	91.88121	1
CGGATAC	1425	91.56495	1
CGGGAGG	140570	91.17761	1
CGGGTTT	81270	90.73715	1
CGGGTAT	41110	89.84092	1
CGGTAAT	13940	89.71182	1
CGGGTAA	10905	89.492836	1
CGGAATA	23495	89.21141	1
GAAGATC	11500	88.514275	6