EGAF00005416439 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416439
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17962740
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	72263	0.40229385940006923	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	69496	0.38688975067278153	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	50023	0.27848201332313444	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	48439	0.26966375953779875	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	40374	0.22476526409668016	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT	26685	0.14855751405409195	No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAA	24280	0.13516868807320043	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	22858	0.1272523011522741	No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATA	20748	0.1155057635973131	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAATGGAA	19101	0.10633678380915161	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAA	18312	0.10194435815471359	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	33725	113.19386	1
CGGGTGC	10805	113.10395	1
CGGTTAA	91755	112.4041	1
CGGCTAA	965	109.800995	1
CGGGTAC	12785	109.27629	1
GGGCGCG	38710	102.68012	2
CGGAATA	31875	99.98659	1
CGGGTAT	41385	95.090645	1
GGCGCGG	40600	94.95917	3
CGGGTTT	81725	94.42732	1
GCGCGGT	40200	94.18751	4
CGGGTGT	37325	93.9513	1
CGCGGTG	40615	93.83974	5
CGGATGC	1180	93.830605	1
CGGTAAT	12625	92.64986	1
GGGAGGC	44230	92.62286	2
CGGGTAA	9745	90.038704	1
CGGAGTG	11805	89.8577	1
CGGGAGG	116145	87.99502	1
CGGAATT	25765	87.678925	1