EGAF00005416496 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416496
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14025525
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	51939	0.3703176886426711	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTAT	30421	0.21689740669244112	TruSeq Adapter, Index 13 (97% over 40bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	27112	0.19330470695392865	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	25363	0.18083458551462422	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	21924	0.15631500425117775	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	20114	0.1434099614809428	No Hit
CGGAATATTTTTATATAAAATTAAGATAGAAGTATTTTCGGAAATATTTT	19919	0.14201963919354177	No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATA	17073	0.1217280636553712	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT	15629	0.11143254887071964	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	15521	0.11066252421923602	No Hit
CGGTTTTATGAAAGGAAGTGTTTAATTTTATTGAGTTGAATGTAAATATT	14648	0.10443815828640995	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	25280	114.62614	1
CGGTTAA	87700	114.59168	1
CGGGTGC	7800	114.19123	1
CGGGTAC	9740	111.35063	1
GGGCGCG	29455	102.06163	2
CGGCTAA	585	99.51976	1
CGGAATA	18640	97.98272	1
CGCGGTG	30565	94.76658	5
GGCGCGG	30765	94.70636	3
GCGCGGT	30500	93.36676	4
CGGGTAT	29755	93.211494	1
CGGGTTT	78560	93.1695	1
CGGGTGT	26365	92.83526	1
CGGAGTG	8525	92.0184	1
CGGGCGT	39020	90.92162	1
CGGTAAT	8535	90.57447	1
CGGATAA	6820	90.20549	1
CGGATGC	895	89.191216	1
CGGTGGT	54905	87.06104	7
GCGGTGG	44810	86.65584	6