EGAF00005416542 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416542
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18775988
Sequences flagged as poor quality	0
Sequence length	125
%GC	32

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	80585	0.42919179539313723	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	57942	0.308596277330386	TruSeq Adapter, Index 4 (100% over 50bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	43029	0.22917036376461256	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	32619	0.17372720945496983	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	29718	0.15827662437790224	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	28776	0.15325957813777896	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	27273	0.14525467314955676	No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG	24692	0.13150839252773278	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	22551	0.12010553053186869	No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGT	21206	0.112942125868423	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	12930	114.88105	1
CGGGCGC	39770	114.789696	1
CGGTTAA	103300	112.627655	1
CGGGTAC	15465	111.525696	1
CGGCTAA	670	108.40802	1
GGGCGCG	45725	104.8531	2
GGCGCGG	47465	97.808685	3
CGGGTGT	38505	96.91438	1
GCGCGGT	47035	96.84318	4
CGCGGTG	47960	96.41176	5
CGGGTAT	43920	96.39283	1
CGGATGC	1340	95.96775	1
CGGGCGT	56620	95.22323	1
CGGAATA	22525	94.38466	1
CGGTAAT	13910	93.733185	1
CGGGTTT	86145	92.36666	1
CGGAGTG	11535	90.632355	1
GCGGTGG	69185	90.58812	6
CGGTGGT	86505	89.85993	7
CGGAATT	23570	89.5938	1