EGAF00005416586 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416586
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15051250
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	55140	0.3663483099410348	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	38080	0.2530022423386762	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	29388	0.19525288597292584	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	29279	0.19452869363009717	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	24713	0.1641923428286687	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	22534	0.1497151399385433	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTAT	17382	0.11548542479860475	TruSeq Adapter, Index 16 (97% over 40bp)
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG	16346	0.10860227555850843	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	15417	0.10243003072834482	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT	15330	0.10185200564737149	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	10275	111.3781	1
CGGTTAA	66835	109.64547	1
CGGGCGC	28330	109.43216	1
CGGGTAC	11900	106.932205	1
GGGCGCG	33490	97.449036	2
CGGGTGT	30690	96.59124	1
CGGGTAT	35415	94.89058	1
CGGAATA	18275	94.40509	1
GGCGCGG	34680	91.216515	3
CGGGTTT	68755	91.15189	1
CGGCTAA	560	90.4243	1
CGCGGTG	34505	90.23049	5
GCGCGGT	34480	89.77816	4
GGGAGGC	37960	89.03149	2
CGGGTAA	8530	88.90652	1
CGGTAAT	10390	88.2424	1
CGGGCGT	44730	88.12852	1
CGGGAGG	95205	88.004196	1
CGGAAAT	8395	87.639626	1
CGGATGC	1170	87.57836	1