FastQCFastQC Report
Thu 12 May 2022
EGAF00005416715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005416715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29782907
Sequences flagged as poor quality0
Sequence length125
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT490990.16485630499400208No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA468950.15745608714421327No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA426480.14319622997177542No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT338230.11356513989719003No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA337930.11346441097908945No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT308980.10374407038238409No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)