FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005416840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005416840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15625922
Sequences flagged as poor quality0
Sequence length125
%GC31

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT228250.14607138061997238No Hit
TGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA219980.14077889291908663No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC211920.13562079728799362No Hit
TNGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA182490.11678670864989599No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA177640.11368289179992067No Hit
TGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGAT159220.10189478739238554No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)