EGAF00005416865 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416865
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17730958
Sequences flagged as poor quality	0
Sequence length	125
%GC	33

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	58783	0.3315274899416038	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC	35912	0.20253840768220197	TruSeq Adapter, Index 12 (100% over 50bp)
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	28615	0.16138439897043352	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	25051	0.14128396220892295	No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	24470	0.13800720750677994	No Hit
TGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	23331	0.13158341472581458	No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	20359	0.11482177105151341	No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG	19754	0.11140965987286192	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	18874	0.10644658906755065	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	29775	115.42691	1
CGGTTAA	105815	114.07794	1
CGGGTGC	9060	112.39754	1
CGGGTAC	10825	111.32502	1
CGGCTAA	1110	110.38893	1
GGGCGCG	35195	105.654655	2
GGCGCGG	36855	97.6682	3
CGCGGTG	37435	96.60346	5
GCGCGGT	36715	96.23023	4
CGGGTAT	31555	94.66507	1
CGGAATA	15640	93.86197	1
CGGGTGT	28435	93.40056	1
CGGGCGT	44225	92.23822	1
CGGAAAT	8240	91.532074	1
CGGATAC	1445	90.97157	1
CGGGTTT	73780	90.826454	1
CGGATGC	1330	90.787415	1
CGGTGGT	65700	90.694046	7
CGGTAAT	10680	90.3917	1
GCGGTGG	53555	90.38826	6