EGAF00005416867 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005416867
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16429454
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	63211	0.38474193968953563	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	39284	0.23910715474780844	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	26633	0.16210520446997204	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	26288	0.16000531727956388	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT	22532	0.13714393673703337	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC	22265	0.13551880665054358	TruSeq Adapter, Index 12 (100% over 50bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	21018	0.12792877961738716	No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATA	18385	0.11190268404537362	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	28035	115.22165	1
CGGTTAA	122995	113.65888	1
CGGGTGC	7725	111.25124	1
CGGCTAA	1050	108.1133	1
CGGGTAC	10705	107.87511	1
GGGCGCG	32780	103.32395	2
GGCGCGG	34050	96.552124	3
CGCGGTG	34605	95.35026	5
CGGAATA	19745	94.30578	1
GCGCGGT	34515	93.58315	4
CGGAAAT	9895	91.77885	1
CGGGTAT	33310	91.194016	1
CGGGTTT	88580	89.92263	1
CGGGTGT	28645	89.55043	1
CGGATAA	8995	89.13451	1
CGGGCGT	45515	89.00412	1
CGGAATT	22340	88.67214	1
CGGTGGT	59355	88.233284	7
GCGGTGG	49430	86.91583	6
CGGAGTG	11030	86.80707	1