EGAF00005418205 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005418205
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21269308
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	89497	0.4207800272580565	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	55099	0.25905403222333323	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	48510	0.22807512120281487	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	45610	0.21444045100103867	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	41224	0.1938191877234558	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT	37588	0.1767241322566771	TruSeq Adapter, Index 18 (97% over 40bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	30741	0.14453220574924205	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT	27638	0.12994310863334152	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	23773	0.11177138438166394	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	39555	115.10496	1
CGGTTAA	154715	113.74269	1
CGGGTGC	11610	113.18811	1
CGGCTAA	1270	111.53399	1
CGGGTAC	14735	106.55126	1
GGGCGCG	46120	102.32431	2
CGGAATA	32455	98.75022	1
GGCGCGG	47575	96.23143	3
CGCGGTG	47890	95.423294	5
GCGCGGT	47600	94.16622	4
CGGGCAT	400	93.73775	1
CGGGTAT	41800	93.37467	1
CGGGTGT	36600	92.3962	1
CGGGCGT	56705	90.83004	1
CGGGTAA	11000	89.70689	1
CGGATAC	2045	89.63784	1
CGGGTTT	107420	89.43472	1
CGGAGTG	14560	89.3558	1
CGGTAAT	14135	89.17931	1
CGGTGGT	84050	88.46873	7