FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005418229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005418229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32182822
Sequences flagged as poor quality0
Sequence length125
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC1163830.36163081037455325No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT676780.21029231059973547No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT568290.17658178018074364No Hit
TGGAGTAGTAAGTTATAATATGGGAAATTATTTTGAAGTTTGGTAGGATA427710.13290009185645685No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA421440.13095184754152386No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA400570.12446702156821425No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT398530.123833143035126No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATA395380.12285436000609269No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG376030.11684183568488804No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)