FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005418317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005418317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24504505
Sequences flagged as poor quality0
Sequence length125
%GC31

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC680080.2775326414469503No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT264470.10792709340588598No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA255670.10433591700791343No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)