EGAF00005418331 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005418331
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15278392
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	43518	0.28483363956102187	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	34137	0.223433198991098	No Hit
CGGAATATTTTTATATAAAATTAAGATAGAAGTATTTTCGGAAATATTTT	24497	0.16033755384728968	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	23063	0.15095174937257796	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT	19797	0.12957515424398067	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	17223	0.11272783156761523	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC	16302	0.10669971028364766	TruSeq Adapter, Index 12 (100% over 50bp)
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATA	15535	0.10167954847604382	No Hit
TGGTTTTATGAAAGGAAGTGTTTAATTTTATTGAGTTGAATGTAAATATT	15392	0.10074358610513462	No Hit
CGGTTTTATGAAAGGAAGTGTTTAATTTTATTGAGTTGAATGTAAATATT	15359	0.10052759478877096	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGTTAA	114635	114.41791	1
CGGGCGC	21655	114.20145	1
CGGGTGC	6980	112.04661	1
CGGCTAA	725	109.18737	1
CGGGTAC	8870	108.23544	1
GGGCGCG	25890	101.283325	2
CGGAATA	18555	98.413155	1
GGCGCGG	26940	94.2888	3
CGCGGTG	26975	93.365524	5
CGGGTGT	24845	92.040115	1
GCGCGGT	27070	91.69745	4
CGGGTTT	77660	90.60504	1
CGGGTAT	27075	90.548676	1
CGGAATT	18015	89.37	1
CGGGCGT	33730	89.28797	1
CGGGCAT	180	89.27915	1
CGGTAAT	8750	88.496895	1
CGGTGGT	48885	87.702644	7
CGGAGTG	9070	87.34329	1
CGGATAA	7230	86.685974	1