EGAF00005418445 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005418445
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19766966
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	61375	0.3104927685918011	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	35284	0.1784998264275863	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC	31167	0.15767214857353426	TruSeq Adapter, Index 7 (100% over 50bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	27303	0.1381243838836977	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	21988	0.11123608954454618	No Hit
CGGAATATTTTTATATAAAATTAAGATAGAAGTATTTTCGGAAATATTTT	21896	0.11077066657574056	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	20824	0.10534747720009233	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	20060	0.10148244298088033	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	29710	114.3763	1
CGGTTAA	120625	113.621155	1
CGGGTGC	9170	112.92302	1
CGGCTAA	950	106.49468	1
CGGGTAC	11810	105.82104	1
GGGCGCG	35925	100.95492	2
CGGAATA	22130	96.62253	1
GGCGCGG	37355	94.0487	3
CGCGGTG	37180	93.78798	5
CGGGTGT	30845	91.43333	1
CGGGCAT	365	91.30568	1
GCGCGGT	37620	91.25122	4
CGGGTAT	35110	90.95414	1
CGGGCGT	45830	90.71546	1
CGGATAC	1660	89.26759	1
CGGGTTT	91625	88.47033	1
CGGATAA	9310	88.34073	1
CGGAGTG	11360	88.0627	1
CGGTAAT	11470	86.49177	1
CGGTGGT	66940	86.44451	7