EGAF00005418493 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005418493
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15976377
Sequences flagged as poor quality	0
Sequence length	125
%GC	32

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	32450	0.20311238273858961	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	31624	0.19794224935978916	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	31588	0.19771691667015617	No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	26896	0.1683485561213284	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	24489	0.15328256212281421	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC	22542	0.14109581915849884	TruSeq Adapter, Index 7 (100% over 50bp)
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	21738	0.1360633890900296	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT	18716	0.11714796164361921	No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGT	18065	0.11307319550609002	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGCTAA	560	110.67106	1
CGGGTGC	6570	108.84403	1
CGGTTAA	47770	105.76132	1
CGGGTAC	6590	104.082726	1
CGGGCGC	16290	103.417366	1
GGGAGGC	45460	98.614494	2
CGGGAGG	105420	96.64639	1
CGGAATA	21780	94.94243	1
CGGTAAT	10825	94.24636	1
CGGGTGT	25725	92.59073	1
CGGGTAA	8555	91.80876	1
CGGGTTT	58930	91.425804	1
GGGCGCG	20185	91.397675	2
CGGGATA	8505	90.24648	1
CGGGTAT	26960	89.321846	1
CGGGAAG	15505	88.20631	1
GCGGAGT	28795	88.01652	7
CGGAGTG	9705	87.008766	1
CGGGAAA	7090	86.4884	1
CGGTATT	26290	85.61406	1