EGAF00005418504 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005418504
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16210868
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC	70074	0.43226556406479905	TruSeq Adapter, Index 12 (100% over 50bp)
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	52405	0.3232707835262122	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	31442	0.19395630141458187	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	21874	0.1349341688551162	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT	19273	0.1188893771758551	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	17866	0.11021001466423636	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	17504	0.10797694484959103	No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATA	17231	0.10629288943688887	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	16741	0.10327022587562863	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGTTAA	108755	113.574265	1
CGGGCGC	25465	112.5697	1
CGGGTGC	7615	109.230865	1
CGGCTAA	760	108.97605	1
CGGGTAC	9590	106.18259	1
GGGCGCG	31385	98.41543	2
GGCGCGG	32165	93.06334	3
CGGAATA	15545	92.83533	1
CGCGGTG	32175	92.313225	5
CGGGTAT	29280	91.26857	1
GCGCGGT	32315	91.04792	4
CGGGTTT	84355	89.84046	1
CGGGTGT	25865	89.58913	1
CGGATAA	7925	89.470024	1
CGGGCGT	40820	89.24467	1
CGGGTAA	7755	88.58851	1
CGGTAAT	10080	87.66182	1
CGGAGTA	13210	87.639496	1
CGGAAAT	8705	87.47661	1
CGGAATT	19760	87.4462	1