FastQCFastQC Report
Wed 11 May 2022
EGAF00005418560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005418560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22839512
Sequences flagged as poor quality0
Sequence length125
%GC32

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CNGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC420800.18424211515552522No Hit
TNGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA277370.12144305009669208No Hit
TNGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG231190.10122370390400635No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)