EGAF00005418575 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005418575
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13713378
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	37485	0.2733462171027445	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	24702	0.1801306723988794	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	20211	0.1473816298216238	TruSeq Adapter, Index 6 (100% over 50bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	15245	0.11116881631936348	No Hit
TGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	14963	0.10911243021230801	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT	14492	0.10567782788456644	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	13797	0.10060978411008578	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGTTAA	87660	112.77324	1
CGGGCGC	19425	112.47569	1
CGGCTAA	705	111.55617	1
CGGGTGC	5930	110.42102	1
CGGGTAC	7005	100.109924	1
GGGCGCG	24095	97.81137	2
GGCGCGG	24625	92.49194	3
CGCGGTG	24580	92.08033	5
CGGATAC	1180	90.88648	1
CGGGTAT	22160	90.52783	1
GCGCGGT	24710	90.343796	4
CGGGTGT	19410	89.20287	1
CGGGTTT	63680	89.16586	1
CGGGCGT	30750	88.76136	1
CGGATAA	6250	88.466064	1
CGGAATT	15485	86.72643	1
CGGAATA	11510	86.2917	1
CGGTGGT	41965	85.82062	7
CGGAAAT	7015	85.61338	1
CGGTAAT	7720	85.59	1