FastQCFastQC Report
Wed 11 May 2022
EGAF00005418600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005418600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25137143
Sequences flagged as poor quality0
Sequence length125
%GC31

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC772910.3074772658133822No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT770640.30657421967166276No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA553870.22033928040270925No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT434820.1729790851728854No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA407840.162245964069982No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA363010.14441179731523188No Hit
CGGGAGGCGGAGTTTGTAGTGAGTCGAGATCGCGTTATTGTATTTTAGTT336810.13398897400551843No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGT311760.12402364103191839No Hit
CGGGAGGCGGAGTTTGTAGTGAGTCGAGATTTCGTTATTGTATTTTAGTT294700.11723687135009733No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT274560.1092248232028596No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)