FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005418625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005418625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23627387
Sequences flagged as poor quality0
Sequence length125
%GC32

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT790790.33469210962684953No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA621900.2632115011279072No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA576550.24401767321964124No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC566270.2396667900686606No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT466090.19726684122962898No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGAT343090.14520860897567725No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTAT325730.13786120318763984TruSeq Adapter, Index 15 (97% over 40bp)
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAA289930.12270929493811568No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAA262830.11123955433582224No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAA261290.11058776833849633No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)