EGAF00005418663 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005418663
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17289842
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	50518	0.2921831211644386	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTAT	43134	0.24947596397931227	TruSeq Adapter, Index 15 (97% over 40bp)
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	30936	0.1789258687268513	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	21236	0.1228235631071701	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA	20180	0.11671593066032646	No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA	19481	0.11267309441000098	No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATA	18829	0.1089020940735028	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	18171	0.10509639127992032	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT	18024	0.10424618108135401	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGTTAA	107280	112.873276	1
CGGGCGC	25135	112.476425	1
CGGGTGC	7915	112.03369	1
CGGGTAC	9675	105.97425	1
CGGCTAA	1005	103.251976	1
GGGCGCG	30120	99.21879	2
GGCGCGG	31025	93.503525	3
CGCGGTG	31225	92.89065	5
CGGATAC	1540	92.65021	1
GCGCGGT	31360	91.00596	4
CGGGTAT	30805	90.49155	1
CGGGTGT	29570	90.36293	1
CGGGTAA	8290	89.82569	1
CGGGTTT	88390	89.80959	1
CGGAATA	15975	89.16775	1
CGGAGTG	9985	87.62692	1
CGGAAAT	8355	87.29211	1
CGGGCGT	41330	86.99089	1
CGGAATT	19945	86.61345	1
CGGTGGT	56450	85.284805	7