FastQCFastQC Report
Wed 11 May 2022
EGAF00005418778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005418778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23637959
Sequences flagged as poor quality0
Sequence length125
%GC31

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGT2291810.9695464824183847No Hit
TGGTAAATAATTATAATAATATAATTTTTTAGTATTTGTTGAGGATTTTT822070.3477753726537896No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT521810.22075086939612681No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA432780.18308687310947616No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGGAATGGAATTTAGT410850.17380942237864108No Hit
TGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA355600.15043599999475418No Hit
TGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGAT346510.14659049032109753No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGT304240.12870823576604054No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT291120.12315784116555917No Hit
TGGGAGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGT262870.11120672474302878No Hit
TGGTTGGAGTGTAATGGAATGTAATAGAGTGGAATGGAATGGAATTTAGA246150.10413335601436656No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATTAATTTGATTGTAATGGAA245650.10392183182989698No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)