FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005418906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005418906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14760617
Sequences flagged as poor quality0
Sequence length125
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC334670.2267317145346973No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT178740.12109249904661845No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA147880.10018551392533254No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)