EGAF00005418968 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005418968
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9464216
Sequences flagged as poor quality	0
Sequence length	125
%GC	33

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC	34280	0.36220644161122273	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC	21139	0.22335711695506527	TruSeq Adapter, Index 12 (100% over 50bp)
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	18594	0.1964663528389462	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	14089	0.14886600221296725	No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT	14002	0.14794675015870307	No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT	12544	0.1325413536631032	No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA	11415	0.12061220918880126	No Hit
TGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGAT	11314	0.1195450315166095	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT	10895	0.11511782909434864	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGCGC	17920	114.194565	1
CGGGTGC	5470	112.86404	1
CGGTTAA	47540	111.61155	1
CGGGTAC	7310	108.177444	1
GGGCGCG	20985	102.985054	2
CGGCTAA	350	98.75136	1
CGGGTAT	21705	97.21858	1
CGCGGTG	21615	96.298256	5
GCGCGGT	21505	95.26896	4
GGCGCGG	21850	95.180855	3
CGGGTGT	17725	94.80823	1
CGGGCGT	24580	93.02359	1
CGGGTTT	43610	92.1541	1
CGGATAC	830	91.18193	1
CGGGAGG	56585	91.032524	1
CGGTAAT	6165	90.66776	1
CGGAATA	8440	89.45762	1
GGGAGGC	23440	89.45576	2
CGGAAAT	4980	88.78871	1
CGGGTAA	4890	87.741844	1