FastQCFastQC Report
Wed 1 May 2024
EGAF00005419915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005419915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33297576
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG819200.2460239147738562No Hit
TCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC362360.10882473847345525No Hit
TCCTGGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC336520.10106441381799083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)