FastQCFastQC Report
Wed 1 May 2024
EGAF00005419939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005419939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28267602
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG584630.2068198073540161No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA502220.17766629090079875No Hit
TCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG484820.17151083420517949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)