FastQCFastQC Report
Wed 1 May 2024
EGAF00005420015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33657989
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG643430.19116709557424835No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA511860.15207682193965896No Hit
TCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG350130.10402582281431015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)