FastQCFastQC Report
Sun 5 May 2024
EGAF00005420021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23032821
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG548270.23803857981616752No Hit
GCTGCTGTCTTCCTAGATTCACTGAATCCACTTCTGTGTAGCACCTGGGT404560.1756450067492818No Hit
TCCTGGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC356940.15497016192675658No Hit
TCCTTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC344340.14949970739580704No Hit
TCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC338710.14705536937920022No Hit
TCTGTGTAGCACCTGGGTCAGCTGTCAATTAATGCTAGTCCTCAGGATTT240780.10453778110809787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)