FastQCFastQC Report
Sun 5 May 2024
EGAF00005420025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41214183
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA1053220.2555479505683759No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1027680.2493510547085211No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG555940.13489045749129613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)