FastQCFastQC Report
Wed 1 May 2024
EGAF00005420033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34139130
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC913010.26743798099131405No Hit
TCCTGGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC821570.24065346715045172No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG757110.22177190807147104No Hit
TCCTTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC656080.19217830097017705No Hit
GCTGCTGTCTTCCTAGATTCACTGAATCCACTTCTGTGTAGCACCTGGGT454600.13316097979063907No Hit
TCCTCGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC454560.1331492630304287No Hit
TCCTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATCT406150.11896905398585142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)