EGAF00005420033 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005420033
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34139130
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

$Per Sequence quality graph$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC	91301	0.26743798099131405	No Hit
TCCTGGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC	82157	0.24065346715045172	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	75711	0.22177190807147104	No Hit
TCCTTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC	65608	0.19217830097017705	No Hit
GCTGCTGTCTTCCTAGATTCACTGAATCCACTTCTGTGTAGCACCTGGGT	45460	0.13316097979063907	No Hit
TCCTCGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC	45456	0.1331492630304287	No Hit
TCCTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATCT	40615	0.11896905398585142	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCTCGC	139180	40.275032	70
TTGCTCG	155650	36.269207	69
ATCGCAC	163485	35.784985	20
ACCACGA	151975	35.595234	54
AATCGCA	164705	35.55584	19
AAATCGC	165360	35.506676	18
TCGCACT	164920	35.452335	21
ACGAACT	159330	35.26824	57
CACGAAC	155745	34.834293	56
CCACGAA	155600	34.791794	55
CGCACTG	168410	34.655193	22
CGAACTG	163075	34.48428	58
ATTGCCG	5825	34.260105	62
GGACTCT	167365	34.153736	35
GACTCTT	166760	34.12747	36
TGGACTC	168975	33.991184	34
CACCACG	161515	33.955456	53
CCTGGAC	169200	33.867817	32
TCCTATC	169815	33.797398	44
CTGGACT	170500	33.646587	33